GgaEX6047726 @ galGal3
Exon Skipping
Description
NA
Coordinates
chrUn_random:29795697-29796167:-
Coord C1 exon
chrUn_random:29796022-29796167
Coord A exon
chrUn_random:29795834-29795948
Coord C2 exon
chrUn_random:29795697-29795766
Length
115 bp
Sequences
Splice sites
3' ss Seq
GGCCGCCCCTCGCCCCACAGAAC
3' ss Score
9.95
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
Exon sequences
Seq C1 exon
AGCCCAAGTTCGTGGATGTTTTTTGGGTGCCGGAGAGCGAGAACCCCGACGACGACAAAATCTACTTCTTCTTCCGCGAGACGGCGGTGGAGCGGCAGCAGGGGCTGGGCAAGGCCAGCGTCAGCCGCATCGGCCAGATCTGCAGG
Seq A exon
AACGACGTGGGCGGGCAGCGCAGCCTGGTGAACAAGTGGACGACGTTCCTCAAGGCGCGCCTGGTGTGCGCCGTGCCCGGCACCGACGGCGCCGACACGCACTTTGATGAGCTCC
Seq C2 exon
GTGACGTCTTCCTGCTGCAGACGAGGGACAAGCGCAACCCTTTGGTCTATGCTGCCTTCTCCACCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013722-'3-8,'3-4,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(41.7=100)
A:
PF0140314=Sema=FE(11.0=100)
C2:
PF0140314=Sema=FE(6.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCAAGTTCGTGGATGTTT
R:
AGGTGGAGAAGGCAGCATAGA
Band lengths:
212-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]