BtaEX6095183 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010138 | SEMA3B
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B [Source:HGNC Symbol;Acc:HGNC:10724]
Coordinates
chr22:50658374-50658896:-
Coord C1 exon
chr22:50658751-50658896
Coord A exon
chr22:50658547-50658658
Coord C2 exon
chr22:50658374-50658443
Length
112 bp
Sequences
Splice sites
3' ss Seq
CCTCCTACTGGCCCCTGCAGAAC
3' ss Score
8.81
5' ss Seq
TCCGTAAGC
5' ss Score
5.75
Exon sequences
Seq C1 exon
AGCCCAAGTTTATCAAGGTCTTTTGGATCCCGGAGAGTGAGAACCCAGATGATGACAAGATCTACTTCTTCTTCCGTGAGTCGGCGGTGGAGGCCACGCCGGCACTGGGACGCCTGTCTGTGTCCCGCGTTGGCCAGATCTGCAGG
Seq A exon
AACGACGTGGGTGGCCAGCGCAGCCTGGTCAACAAGTGGACAACGTTCCTGAAGGCGCGGCTGGTGTGCTCGGTGCCCGGTGCCGAGGGCGATACGAACTTTGACCAGCTCC
Seq C2 exon
AGGACGTGTTCCTGTTGTCCTCGAGAGATCGCTGGACCCCACTGCTCTATGCTGTCTTCTCCACATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010138-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=0.036 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(10.8=100)
A:
PF0140314=Sema=FE(8.4=100)
C2:
PF0140314=Sema=FE(5.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAAGTTTATCAAGGTCTTTTGG
R:
CTGGATGTGGAGAAGACAGCA
Band lengths:
215-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]