Special

GgaEX1000661 @ galGal3

Exon Skipping

Description
NA
Coordinates
chr12:2485129-2485829:+
Coord C1 exon
chr12:2485129-2485274
Coord A exon
chr12:2485572-2485686
Coord C2 exon
chr12:2485760-2485829
Length
115 bp
Sequences
Splice sites
3' ss Seq
CAGCGCTCGGTGCCCGGCAGAAC
3' ss Score
3.58
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGCCCACGTTCGTCGGTGCCTTTGCCATCCCCGACACCCACAACCCACACGACGACAAGGTCTACGTCTTCTTCCGTGAGACGGCCCTGGAGGGCGGGCAGTGGGAGCGGCGACACATCCACGCCAGGGTGGCCCGGGTCTGCAAG
Seq A exon
AACGACGTCGGAGGGAAGCGTGGCCTCATCAACCGCTGGAGCACATTCCTCAAGGCCCGCCTGCTGTGCTCCATCCCCGGGCCCCAGGGCACGCAGACACACTTTGACCAGTTGG
Seq C2 exon
AGGACGTTTTCCTCCTCCACACACGAGACCCCCAGAACCCCCTCGTCTTCGGCCTCTTCACGGCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003203-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0140314=Sema=FE(11.0=100)
A:
PF0140314=Sema=FE(8.7=100)
C2:
PF0140314=Sema=FE(5.3=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTTCGTCGGTGCCTTTG
R:
CTGGATGCCGTGAAGAGG
Band lengths:
211-326
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]