RnoEX6037497 @ rn6
Exon Skipping
Gene
ENSRNOG00000017704 | Sema3f
Description
semaphorin 3F [Source:RGD Symbol;Acc:1308514]
Coordinates
chr8:116446285-116446870:-
Coord C1 exon
chr8:116446731-116446870
Coord A exon
chr8:116446521-116446635
Coord C2 exon
chr8:116446285-116446354
Length
115 bp
Sequences
Splice sites
3' ss Seq
CAACCTGCCCCCGCCCCCAGAAC
3' ss Score
9.65
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
Exon sequences
Seq C1 exon
ATCCTTCATTCATACATGCTGAGCTCATCCCTGACAGCGCTGAGCGCAACGACGATAAACTCTACTTCTTCTTCCGAGAGCGCTCTGCAGAGGCTCCGCAGAACCCTGCGGTGTACGCCCGCATCGGGCGCATCTGCCTC
Seq A exon
AACGATGACGGTGGCCATTGCTGCCTGGTCAACAAGTGGAGCACATTCCTGAAGGCACGGCTCGTCTGCTCTGTGCCAGGCGAGGATGGCATTGAGACCCACTTCGATGAACTCC
Seq C2 exon
AGGACGTGTTTGTCCAGCAGACCCAGGACGTCAGGAACCCAGTCATTTATGCTGTCTTCACCTCTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017704-'18-14,'18-13,19-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(9.7=100)
A:
PF0140314=Sema=FE(8.0=100)
C2:
PF0140314=Sema=FE(4.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTTCATTCATACATGCTGAGCT
R:
CCTGAAGAGGTGAAGACAGCA
Band lengths:
210-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]