DreEX6023718 @ danRer10
Exon Skipping
Gene
ENSDARG00000011163 | sema3fa
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa [Source:ZFIN;Acc:ZDB-GENE-050513-1]
Coordinates
chr6:42895849-42907955:+
Coord C1 exon
chr6:42895849-42895988
Coord A exon
chr6:42898402-42898516
Coord C2 exon
chr6:42907886-42907955
Length
115 bp
Sequences
Splice sites
3' ss Seq
TGAGCTCATTTCCTCTGCAGAAT
3' ss Score
8.92
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
ATCCAACATTTGTCCATGCTCAGCTCATCCCTGATAGTGCAGAAAAGAATGACGACAAGCTGTATTTCTTCTTCCGTGAGAAGGCCTCTGAGATGGGTCAGACTCCCATGGCTCAATCTAGGATTGGCAGAATTTGCCTG
Seq A exon
AATGATGATGGAGGACACTGCTGTCTGGTGAACAAGTGGAGCACCTTCCTGAAGGCTCGGCTCATCTGCTCTGTCACCGGCTCTGATGGCATCGAGACGCATTTCGATGAGCTCA
Seq C2 exon
GGGACGTGTACATCCAGAAGACTCAAGACACAAAGAATCCTGTCATCTACGGCGTCTTTTCCGTGTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011163-'11-15,'11-14,12-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(9.7=100)
A:
PF0140314=Sema=FE(8.1=100)
C2:
PF0140314=Sema=FE(4.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAACATTTGTCCATGCTCAG
R:
CGGAAAAGACGCCGTAGATGA
Band lengths:
202-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]