HsaEX7002008 @ hg38
Exon Skipping
Gene
ENSG00000012171 | SEMA3B
Description
semaphorin 3B [Source:HGNC Symbol;Acc:HGNC:10724]
Coordinates
chr3:50273298-50273828:+
Coord C1 exon
chr3:50273298-50273443
Coord A exon
chr3:50273535-50273646
Coord C2 exon
chr3:50273759-50273828
Length
112 bp
Sequences
Splice sites
3' ss Seq
CCCTTTGATCGTCCCGGCAGAAC
3' ss Score
9.8
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
Exon sequences
Seq C1 exon
AGCCCAAGTTTGTCAAGGTATTTTGGATCCCGGAGAGCGAGAACCCAGACGACGACAAAATCTACTTCTTCTTTCGTGAGACGGCGGTAGAGGCGGCGCCGGCACTGGGACGCCTGTCCGTGTCCCGCGTTGGCCAGATCTGCCGG
Seq A exon
AACGACGTGGGCGGCCAGCGCAGCCTGGTCAACAAGTGGACGACGTTCCTGAAGGCGCGGCTGGTGTGCTCGGTGCCCGGCGTCGAGGGCGACACCCACTTCGATCAGCTCC
Seq C2 exon
AGGATGTGTTTCTGTTGTCCTCGCGGGACCACCGGACCCCGCTGCTCTATGCCGTCTTCTCCACGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000012171-'23-30,'23-27,24-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(10.9=100)
A:
PF0140314=Sema=FE(8.4=100)
C2:
PF0140314=Sema=FE(5.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCAAGTTTGTCAAGGTAT
R:
ACGTGGAGAAGACGGCATAGA
Band lengths:
212-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains