MmuEX6068661 @ mm10
Exon Skipping
Gene
ENSMUSG00000057969 | Sema3b
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B [Source:MGI Symbol;Acc:MGI:107561]
Coordinates
chr9:107601584-107602105:-
Coord C1 exon
chr9:107601960-107602105
Coord A exon
chr9:107601760-107601871
Coord C2 exon
chr9:107601584-107601653
Length
112 bp
Sequences
Splice sites
3' ss Seq
CCTTCTGATCCTGTGAGCAGAAT
3' ss Score
5.62
5' ss Seq
TTCGTGAGT
5' ss Score
7.9
Exon sequences
Seq C1 exon
AACCCAAGTTTGTCAAGGTCTTTTGGATCCCAGAGAGTGAGAACCCTGATGACGATAAAATCTATTTCTTCTTCCGCGAGTCCGCTGTGGAAGCAGCACCAGCAATGGGGCGCATGTCTGTGTCTCGTGTTGGCCAGATCTGCAGG
Seq A exon
AATGACCTGGGTGGCCAGCGGAGCTTGGTCAACAAATGGACCACATTTCTGAAGGCGCGGCTTGTGTGCTCAGTACCTGGAGTTGAGGGTGACACCCACTTTGACCAACTTC
Seq C2 exon
AGGATGTTTTCCTTCTGTCCTCCCGAGACCGCCAGACACCTCTTCTCTATGCTGTCTTCTCCACCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057969-'28-27,'28-26,29-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(10.8=100)
A:
PF0140314=Sema=FE(8.4=100)
C2:
PF0140314=Sema=FE(5.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGTTTGTCAAGGTCTTTTGG
R:
TGGAGGTGGAGAAGACAGCAT
Band lengths:
213-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types