GgaEX6047755 @ galGal3
Exon Skipping
Gene
ENSGALG00000013433 | FAM125A
Description
NA
Coordinates
chrUn_random:30293492-30294598:-
Coord C1 exon
chrUn_random:30294534-30294598
Coord A exon
chrUn_random:30294398-30294448
Coord C2 exon
chrUn_random:30293492-30294310
Length
51 bp
Sequences
Splice sites
3' ss Seq
TAAAACCCATTTAATTTCAGGCC
3' ss Score
6.48
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
CGATGGATGGAGTCCCTTTCACACTACACCCCAAATTCGAGCGCAGTCCCAAATCCGACAGCAGT
Seq A exon
GCCATCCTCACTGACCTGACTGTCAAATCGCTCGCTGACATTGAGAAAGAG
Seq C2 exon
TACAACTACACTTTTGTAGTGGAACGGACGGCAGCCGCTCGCCTCCCTCCCTCCATTTGCTGACACCACTCAGTGCTGTGAGGACGTGAAGCGCTGACCCACGCTCCCTCCCTAATTAAGATCCAATTACAGGAAGTGCTGAGGGACGACAATAAAGGCGTTTCTCTCATCGCCTGCCAAAGTATTTTCGTAATGGTTTTGGGATGTGCGGCTGCGATGGAGGAGTTCCTGGTGCTGTTGCTTCTGTGATTTGAAGTGTGGGGCAGAGAGGGGTGGAAGTGTGGGGCGGTATGGGTGTGTTTATGGCGGTGTTTCTTCTCCCGTGCTTTGACAACACCGCAGCTCTACTCTGAACATCGGCTCCTGTCGGATGTTAGTGTTTCTGGTGCCACCTTTCAGCCTAATCTTCCCTTCAATGTATACTCCCCATTAAAAACATCACAAAGGAAGTCCCAGCCACATTTCAAAATACATCGGGCTTGATTTTTATTTACCAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013433-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(8.5=100)
A:
PF102404=DUF2464=FE(6.5=100)
C2:
PF102404=DUF2464=PD(2.8=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCCCAAATCCGACAGCAG
R:
TAATTAGGGAGGGAGCGTGGG
Band lengths:
140-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]