RnoEX0056695 @ rn6
Exon Skipping
Gene
ENSRNOG00000017949 | Mvb12a
Description
multivesicular body subunit 12A [Source:RGD Symbol;Acc:735220]
Coordinates
chr16:19977420-19978478:+
Coord C1 exon
chr16:19977420-19977481
Coord A exon
chr16:19978033-19978089
Coord C2 exon
chr16:19978220-19978478
Length
57 bp
Sequences
Splice sites
3' ss Seq
ACTCTCATTCTGTCCCTTAGAAC
3' ss Score
8.8
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
CCATGGATGGGGTTCCCTTTACCCTGCACCCGAGATTTGAGGGCAAGAGCTGCGGACCCTTG
Seq A exon
AACTTGTCTGCCTTTGGGGACCTGACGATTAAATCACTGGCAGACATTGAGAAGGAG
Seq C2 exon
TATAACTATGGCTTCGTGGTGGAGAAGACCGCAGCTGCACGCCTGCCCCCCAGTGTCTCATAGCCCAGCCACAGGTGCCACCTGGCGCCACCTGCCTCACAGACACTGCTGATCGGCCCCAGCCTCTCAGCCCGGCTACTTGCACAAGGGGTCTCTTGCCTGGTGGTGCAGGGGCGGCCTGGGCAGAGCAGTGACCTTCTCTCAGAAGTCTGAGTCTAGCAGCCACATATGCACCAGCAGTAAACACTACCTGGAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017949-'9-15,'9-12,12-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.200
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(7.9=100)
A:
PF102404=DUF2464=FE(7.1=100)
C2:
PF102404=DUF2464=PD(2.8=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGAGATTTGAGGGCAAGAG
R:
GATCAGCAGTGTCTGTGAGGC
Band lengths:
148-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]