DreEX0048095 @ danRer10
Exon Skipping
Gene
ENSDARG00000091619 | mvb12ba
Description
multivesicular body subunit 12Ba [Source:ZFIN;Acc:ZDB-GENE-060929-372]
Coordinates
chr5:4679082-4684641:-
Coord C1 exon
chr5:4684586-4684641
Coord A exon
chr5:4682949-4683008
Coord C2 exon
chr5:4679082-4680104
Length
60 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTCTGTGTGTTTCAGTTG
3' ss Score
11.23
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CGATGGATGGAGTGCCTTTCATGATTTCTGAGAAGTTTGCAAGTGCCTCCACTGAT
Seq A exon
TTGCAGCAGGTGGATCTAATGGGCATCAGAATTAAATCACTTGCAGAGATTGAGAAGGAG
Seq C2 exon
TATGAATATAGTTTCCGGACGGAGCACAGTGCTGCGGCGCGTCTGCCACCCAGTCCAACCAGAACATCTCTGGGCTCCGAGGCCTAACGTTCACAAAAAAAAAACCCTGATCTGAGCACAGACTCTCTGAGGTCAAAACAGAAACCTGCAACAAGTCTGACGGAGGGGGAACATAATAAGATACTGTTTGCTTCTCTCTGTGAACAAAATTAACAAGTATCATTTGATGTGGTCAAGTCTCTCTTAAGTTGATGCTCCTTTTTATTGTTTGGTAAAGAGCTTCTGATGCTACCCCGATCAAACCCAAACCACTACAGTGTCATCTGAAAGGATGGAAACAGACTCGATTTCTGTTATTATGCAACAAGTATTGTGTATTCAGACTTTTCTGGCTGCTGGATTGAGATGCTGTTACTATTGTGGGTTCTTATTAAGGGTCGGACTTGGACAAACCCTTAGGAATTCACAATTGAGTTCATGCGTCAAGTGCATGGATCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091619-'11-13,'11-10,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.033 C2=0.750
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(6.9=100)
A:
PF102404=DUF2464=FE(7.3=100)
C2:
PF102404=DUF2464=PD(2.7=24.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGGATGGAGTGCCTTTCA
R:
CTCGGAGCCCAGAGATGTTCT
Band lengths:
137-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]