BtaEX0023341 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003914 | MVB12A
Description
Bos taurus family with sequence similarity 125, member A (MVB12A), mRNA. [Source:RefSeq mRNA;Acc:NM_001034283]
Coordinates
chr7:5611162-5612206:-
Coord C1 exon
chr7:5612145-5612206
Coord A exon
chr7:5611763-5611819
Coord C2 exon
chr7:5611162-5611561
Length
57 bp
Sequences
Splice sites
3' ss Seq
GACCTGCCCTTGCCTGCCAGGCC
3' ss Score
8.89
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
CCATGGATGGGGTTCCCTTCACGCTGCACCCCCGATTCGAGGGCAAGAGCTGTGGTCCCCTG
Seq A exon
GCCTTCTCTGCCTTTGCTGATCTGACCATCAAATCGCTGGCGGACATTGAGGCGGAG
Seq C2 exon
TACAACTACGGCTTCGTGGTGGAGAAGACGGCAGCTGCCCGCCTGCCTCCAAGCGTCTCTTAGCCCTTCAGCAGTCCCAGGGAGGAGCCGCCACATCTGACACCGCCCCTCCCCACCCCATCACCCCGCTGACTGGCAGCTGCCCAGCCCATTCCACCTTGGGACCTTTAGCAGCGCAAGGCATGCTGGACCCTCGGCCACTTGGAGGAGCTGCAGCCTGGAGGAGGGAGCATGACCGGTTCGCCCTGTGATGGGTTCCCGGGCCCTAATGGATAGGGGTGGGGGCTGGACAGAAACCAGTGCCTTCAAGTCATTTGTGTCAAAACTCTCTGGTGCCTGGAGGCCATGCGGGTGTCCTGGTAATAAACACCACGCTGTCCAGAGGTTATCTATAATCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003914-'7-10,'7-9,8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.050
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(7.9=100)
A:
PF102404=DUF2464=FE(7.1=100)
C2:
PF102404=DUF2464=PD(2.8=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGATGGGGTTCCCTTCAC
R:
GGGACTGCTGAAGGGCTAAGA
Band lengths:
139-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development