MmuEX6036328 @ mm9
Exon Skipping
Gene
ENSMUSG00000031813 | Fam125a
Description
family with sequence similarity 125, member A [Source:MGI Symbol;Acc:MGI:1920961]
Coordinates
chr8:74070872-74071923:+
Coord C1 exon
chr8:74070872-74070933
Coord A exon
chr8:74071477-74071533
Coord C2 exon
chr8:74071661-74071923
Length
57 bp
Sequences
Splice sites
3' ss Seq
CTCTCACTTCTCTCCTTTAGAAC
3' ss Score
10.63
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
CCATGGACGGAGTCCCCTTTACCCTGCACCCAAGATTTGAGGGCAAGAGCTGTGGGCCCTTG
Seq A exon
AACTTGTCTGCTTTTGGGGACCTGACGATCAAATCACTGGCAGACATTGAGAAGGAG
Seq C2 exon
TATAACTATGGCTTCGTGGTGGAGAAGACTGCAGCTGCACGCCTGCCTCCCAGCGTCTCATAGACCAGCCCCAGGTGCCACCTGGTCGCCTCCTGCCTTGCAGATACTGCTGATTGACACCCAGCCTCTCTGTCCAACTGCTTGCACAAAGGGTCTCTTGCCTGGTGGTGCAGGGGCGGCCTGGGCAGAGCAGTGGCCTTCTCTCACAGAAGTCTGTGTCTAGAGGCCACATATGCACCAGCAGTAAACGCTACCTGGGACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031813-'9-13,'9-11,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.200
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(7.9=100)
A:
PF102404=DUF2464=FE(7.1=100)
C2:
PF102404=DUF2464=PD(2.8=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAGTCCCCTTTACCCTG
R:
CACCTGGGGCTGGTCTATGAG
Band lengths:
133-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: