GgaEX6047764 @ galGal3
Exon Skipping
Gene
ENSGALG00000013419 | PBX4
Description
NA
Coordinates
chrUn_random:30307410-30313353:-
Coord C1 exon
chrUn_random:30313187-30313353
Coord A exon
chrUn_random:30310589-30310662
Coord C2 exon
chrUn_random:30307410-30307651
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTGTTTTCCTGCAGGAA
3' ss Score
13.76
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTTGCTCTCCAGGGGGGTCTCCCTCCGGGGGGTCCCACTGCCCCCACCGCTACTCCGGGGGATCCGAGCGCTGTGCCCCCCCCGGGCCCTCCCCCCCACGATACGGGCGACGTTCTGCAGCAGATTATGGCCATCACCGATCAGAGCTTGGATGAGGCCCAGGCGAG
Seq A exon
GAAACACGCCCTGAACTGCCACAGGATGAAGCCTGCTCTGTTCAGTGTGCTCTGTGAGATCAAGGAGAAAACAG
Seq C2 exon
TGTTAAGTATTCGTGGTATTCAGGAAGAAGACCCCCCCGATGCCCAACTAATGAGGCTAGATAACATGTTGCTGGCGGAGGGCGTCTCCGGCCCCGAGAAAAGAGGAAGAGGAGCACCGATGGCTGTAGCAGCAACACCAGGTGGCTGTCCAAATGACAATAGCATTGAGCACTCTGACTACAGGGCCAAGCTGTCACAGATCCGACAGATATACCACTCTGAGCTAGAGAAATATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013419-'1-1,'1-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=0.192 C2=0.679
Domain overlap (PFAM):
C1:
PF037928=PBC=PU(13.8=49.1)
A:
PF037928=PBC=FE(12.8=100)
C2:
PF037928=PBC=FE(41.0=100),PF070286=DUF1319=PU(43.6=50.6),PF040917=Sec15=PU(43.1=34.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGACGTTCTGCAGCAGATTA
R:
TCGGTGCTCCTCTTCCTCTTT
Band lengths:
181-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]