RnoEX6055345 @ rn6
Exon Skipping
Gene
ENSRNOG00000010736 | Pbx4
Description
PBX homeobox 4 [Source:RGD Symbol;Acc:1305100]
Coordinates
chr16:21310921-21338771:-
Coord C1 exon
chr16:21338593-21338771
Coord A exon
chr16:21316099-21316172
Coord C2 exon
chr16:21310921-21311162
Length
74 bp
Sequences
Splice sites
3' ss Seq
GCCTCTACTGTCTCTTTCAGAAA
3' ss Score
11.22
5' ss Seq
CTGGTAGGC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GGACCTGTCCCTCTGCGCTCGCTCGGCCCGTAGTTCATGGCCGCCCCTCTGCGTCCCGTGCCGCCACAGCCCGCCCCGCGCCGCTCGCCGCCCACAGCTCCACTGGGCCATGACACGAGCGACGTCCTGCAGCAAATCATGGCCATCACCGACCAGAGCCTGGACGAGGCTCAGGCCAG
Seq A exon
AAAGCATGCCCTGAACTGCCATCGGATGAAGTCTGCTCTCTTCAGTGTGCTCAGCGAGATCAAGGGGAAGACTG
Seq C2 exon
CTGTGAGCGTCCAGACGCAGGAAGAGGACCCTCCCGATGCCCAGCTGCTGAGGTTGGATAACATGCTGCTGGCTGAGGGTGTGTCCAGGCCAGAGAAGCGAGGACGAGGAGGAGCAGCGGCAGGCAGCACAGCAACACCAGGTGGCTGCCCAAATGACAATAGCATTGAACACTCAGACTACAGGGCCAAGCTGTCCCAGATCCGACAGATTTACCACTCAGAGCTAGAGAAGTATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010736-'0-7,'0-4,4-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.986 A=0.269 C2=0.716
Domain overlap (PFAM):
C1:
PF037928=PBC=PU(14.3=58.3),PF070286=DUF1319=PU(3.0=10.4)
A:
PF037928=PBC=FE(12.8=100),PF070286=DUF1319=FE(14.9=100)
C2:
PF037928=PBC=FE(40.8=100),PF070286=DUF1319=PU(32.9=34.6),PF083976=IMD=PU(20.3=30.9)
Main Skipping Isoform:
ENSRNOT00000014265fB10344
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCCTGCAGCAAATCATGG
R:
CTCCTCGTCCTCGCTTCTCTG
Band lengths:
169-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]