BtaEX0026044 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009975 | PBX4
Description
pre-B-cell leukemia homeobox 4 [Source:HGNC Symbol;Acc:HGNC:13403]
Coordinates
chr7:3631055-3678403:+
Coord C1 exon
chr7:3631055-3631206
Coord A exon
chr7:3652831-3652904
Coord C2 exon
chr7:3678159-3678403
Length
74 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCCCCTCTCTTTCAGAAA
3' ss Score
12.06
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATGGACGCTCCCCAGCGCCCGCCGCGCCCCGCGCCGCCACCGCCTGCCCCGCGCCGCTCGCCGCCTGGGCCCCCACCGGGCTCCAACACAGGCGATGTCCTGCAGCAGATCATGGCCATCACCGACCAGAGCCTGGACGAGGCGCAGGCCAG
Seq A exon
AAAGCACGCTCTGAATTGCCATCGGATGAAGCCTGCGCTCTTCAGCGTGCTCTGTGAGATCAAGGAAAAGACAG
Seq C2 exon
TGTCGAGCATCCATGGCATTCAGGAAGTGGGCCCCCCTGATGCTCAGCTCCTGAGGCTGGATAACATGCTGCTGGCCGAGGGCGTGTCCAGGCCTGAGAAGCAAGGGAGGGGAGCATCGGCAGCAGCCAACGCAGCAATGCCAGGTGGCCGTCCAAACGACAGTGGCCTTGAGCACTCTGACTACAGGGCCAAGCTGTCCCAGATCCGACAGATGTACCACTCCGAGCTAGAGAAATATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009975-'0-4,'0-1,5-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.269 C2=0.707
Domain overlap (PFAM):
C1:
PF037928=PBC=PU(13.3=51.0)
A:
PF037928=PBC=FE(12.8=100)
C2:
PF037928=PBC=FE(41.5=100),PF070286=DUF1319=PU(34.9=36.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGTCCTGCAGCAGATCAT
R:
CTCCCCTCCCTTGCTTCTCAG
Band lengths:
174-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development