MmuEX0033853 @ mm10
Exon Skipping
Gene
ENSMUSG00000031860 | Pbx4
Description
pre B cell leukemia homeobox 4 [Source:MGI Symbol;Acc:MGI:1931321]
Coordinates
chr8:69832690-69866603:+
Coord C1 exon
chr8:69832690-69832851
Coord A exon
chr8:69859080-69859153
Coord C2 exon
chr8:69866468-69866603
Length
74 bp
Sequences
Splice sites
3' ss Seq
GCCTTTGCTGCCTCTTTCAGAAA
3' ss Score
11.01
5' ss Seq
CTGGTAGGC
5' ss Score
6.99
Exon sequences
Seq C1 exon
TCGCTCGGGACTGTAGCCCATGGCCGCCCCTCTGCGTCCCGTGCCGCCACAGCCCGCCCCGCGCCGCCTGCCGACCACAGCTCCACTAGGCCATGACACGAGCGACGTCCTGCAGCAGATCATGGCCATCACCGACCAGAGCCTGGACGAGGCTCAGGCCAG
Seq A exon
AAAGCATGCCCTGAACTGCCATCGGATGAAGTCTGCTCTCTTCAGTGTGCTCTGCGAGATCAAGGGGAAGACTG
Seq C2 exon
GCGCAAGCGGCGGAATTTCAGCAAGCAGGCCACAGACGTGCTGAATGAATATTTCTATTCCCATTTGAGCAACCCTTACCCCAGTGAAGAGACCAAAGAAGAGCTGGCCAGGAAGGGTGGCATCACAGTGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031860_MULTIEX1-1/5=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.860 A=0.115 C2=0.383
Domain overlap (PFAM):
C1:
PF037928=PBC=PU(43.9=60.4)
A:
PF037928=PBC=FE(12.8=100),PF070286=DUF1319=FE(14.4=100)
C2:
PF0004624=Homeobox=PU(75.0=97.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATCATGGCCATCACCGAC
R:
GACACTGTGATGCCACCCTTC
Band lengths:
179-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types