DreEX0053815 @ danRer10
Exon Skipping
Gene
ENSDARG00000052150 | pbx4
Description
pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
Coordinates
chr3:52745299-52793435:+
Coord C1 exon
chr3:52745299-52746411
Coord A exon
chr3:52756828-52756901
Coord C2 exon
chr3:52793191-52793435
Length
74 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTGTCTCTTGCAGAAA
3' ss Score
13.57
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
TCCAGGGACGCTCTTATTTTCTTGTTAGTCTGCTTTATGGGAGTGCTAGTGTGCAGCCTTTTGCTGTAGACAACACTGGTTTTTAGCAGGAACCGCACGCGGTGTTTCACCATCGGTCGCGCGTCGTTTGGATGTGGTTCAGCCTCACATTTCAGTCGCACTCTCGTTGTTTGTTTTCTTTTTTTATCTAGTGGCTCGTTCAGCTCCGCGTTTGTATCCGCGCTGTCGGTGGTACATGCTCACTGAGACAGCCCGCTGAAACACGCTTTCATTGGTTTGCGGCGGGGAAACGGAGAGATTCGGCTCAAAAGTATTATGGATGATCAGACCCGAATGCTGGCTAGCATGGGCGGACTCGGCGGACTCTCGCAAGCCGACGTGGGTGACCCCGATTCGGTTCGGAAGCAGCAGTCGCTCGGTCAACCGCAGCAAGACATAGGAGATATCCTCCAGCAGATCATGGCCATCACCGACGAGAGCCTCGACGAAGCCCAGGCGAG
Seq A exon
AAAACACGCACTGAACTGCCACAGGTTGAAGCCAGCTCTCTTCAGTGTTTTATGCGAGATCAAAGAAAAAACTG
Seq C2 exon
TGCTGAGCATCAGAGGCGTGCAGGAGGAGGATCCTCCAGATCCACAGATCATGCGTTTGGATAACATGCTGCTGGCTGAGGGCGTCTCTGGGCCAGAGAAGGGTGGAGGATCTGCGGCGGCAGCAGCAGCTGCAGCGGCAGCTGGAGGATCACCTAATGATGGCAGCATCGAACACTCCGACTACAGAGCCAAACTCGCACAGATCCGCCAGATCTACCACTCCGAGCTGGAGAAATACGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052150-'0-7,'0-2,2-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.782 A=0.058 C2=0.652
Domain overlap (PFAM):
C1:
PF037928=PBC=PU(14.6=46.8)
A:
PF037928=PBC=FE(12.6=100)
C2:
PF037928=PBC=FE(40.9=100),PF070286=DUF1319=PU(34.6=34.1),PF040917=Sec15=PU(32.1=31.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGCAGATCATGGCCATC
R:
GCAGATCCTCCACCCTTCTCT
Band lengths:
168-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]