GgaEX6047837 @ galGal3
Exon Skipping
Gene
ENSGALG00000013587 | COL2A1
Description
NA
Coordinates
chrUn_random:31478427-31478722:-
Coord C1 exon
chrUn_random:31478681-31478722
Coord A exon
chrUn_random:31478624-31478677
Coord C2 exon
chrUn_random:31478427-31478534
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCCCCATCTCTTCCCATTAGGGT
3' ss Score
10.32
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
CCCCCATCAACCCCTTTATCAACCTCCCCCATCTCTTCCCAT
Seq A exon
GGTGAGCGTGGCGAGCCCGGTGCCCCCGGTCCTGCTGGATTTGCTGGCCCCCCG
Seq C2 exon
GGCGCCGATGGACAACCCGGTGCCAAAGGCGAGCAGGGAGAGCCCGGGCAGAAGGGTGACGCGGGCGCTCCTGGTCCCCAAGGTCCCTCCGGCGCTCCTGGCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013587-'2-3,'2-2,3-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(6.9=28.6)
A:
PF0139113=Collagen=FE(29.3=100)
C2:
PF0139113=Collagen=PD(58.6=94.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCATCAACCCCTTTATCA
R:
GGAGGGACCTTGGGGACC
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]