GgaEX6047838 @ galGal3
Exon Skipping
Gene
ENSGALG00000013587 | COL2A1
Description
NA
Coordinates
chrUn_random:31478265-31478677:-
Coord C1 exon
chrUn_random:31478624-31478677
Coord A exon
chrUn_random:31478427-31478534
Coord C2 exon
chrUn_random:31478265-31478318
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTGGCTGCTGTTCCCATCAGGGC
3' ss Score
7.6
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
GGTGAGCGTGGCGAGCCCGGTGCCCCCGGTCCTGCTGGATTTGCTGGCCCCCCG
Seq A exon
GGCGCCGATGGACAACCCGGTGCCAAAGGCGAGCAGGGAGAGCCCGGGCAGAAGGGTGACGCGGGCGCTCCTGGTCCCCAAGGTCCCTCCGGCGCTCCTGGCCCCCAG
Seq C2 exon
GGTCCAACCGGTGTCACTGGTCCCAAAGGAGCTCGTGGGGCTCAGGGTCCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013587-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(29.3=100)
A:
PF0139113=Collagen=PD(58.6=94.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]