GgaEX6047842 @ galGal3
Exon Skipping
Gene
ENSGALG00000013587 | COL2A1
Description
NA
Coordinates
chrUn_random:31476099-31476543:-
Coord C1 exon
chrUn_random:31476518-31476543
Coord A exon
chrUn_random:31476304-31476357
Coord C2 exon
chrUn_random:31476099-31476206
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACATCCCCTTTTCCTCCTAGGGC
3' ss Score
10.09
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTCCTGCTGGAGAACCCGGGCGCGAG
Seq A exon
GGCAACCCTGGTGCTGACGGTCCCCCAGGCAGGGATGGCGCAGCTGGCGTGAAG
Seq C2 exon
GGTGATCGTGGTGAGACCGGCCCTGTGGGTGCCCCCGGTGCTCCTGGAGCCCCTGGCGCCCCCGGCCCTGTTGGTCCCACTGGAAAACAAGGAGACAGAGGCGAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013587-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(1.5=3.4),PF0139113=Collagen=FE(47.5=100)
A:
PF0139113=Collagen=FE(28.8=100),PF0139113=Collagen=PU(18.7=77.8)
C2:
PF0139113=Collagen=PD(16.9=27.8),PF0139113=Collagen=FE(46.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGCTGGAGAACCCGG
R:
TCTCGCCTCTGTCTCCTTGTT
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]