GgaEX6047843 @ galGal3
Exon Skipping
Gene
ENSGALG00000013587 | COL2A1
Description
NA
Coordinates
chrUn_random:31475777-31476357:-
Coord C1 exon
chrUn_random:31476304-31476357
Coord A exon
chrUn_random:31476099-31476206
Coord C2 exon
chrUn_random:31475777-31475830
Length
108 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTTGTCTGCTCGCAGGGT
3' ss Score
10.95
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GGCAACCCTGGTGCTGACGGTCCCCCAGGCAGGGATGGCGCAGCTGGCGTGAAG
Seq A exon
GGTGATCGTGGTGAGACCGGCCCTGTGGGTGCCCCCGGTGCTCCTGGAGCCCCTGGCGCCCCCGGCCCTGTTGGTCCCACTGGAAAACAAGGAGACAGAGGCGAGACG
Seq C2 exon
GGTGCACAAGGGCCCATGGGTCCCTCTGGTCCCGCTGGAGCTCGAGGAATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013587-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(28.8=100),PF0139113=Collagen=PU(18.7=77.8)
A:
PF0139113=Collagen=PD(16.9=27.8),PF0139113=Collagen=FE(46.7=100)
C2:
PF0139113=Collagen=FE(22.7=100),PF0139113=Collagen=PU(13.1=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACCCTGGTGCTGAC
R:
GCATTCCTCGAGCTCCAGC
Band lengths:
106-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]