GgaEX6047844 @ galGal3
Exon Skipping
Gene
ENSGALG00000013587 | COL2A1
Description
NA
Coordinates
chrUn_random:31475560-31476206:-
Coord C1 exon
chrUn_random:31476099-31476206
Coord A exon
chrUn_random:31475777-31475830
Coord C2 exon
chrUn_random:31475560-31475667
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTTTTCTCCCTGCAGGGT
3' ss Score
13.58
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGTGATCGTGGTGAGACCGGCCCTGTGGGTGCCCCCGGTGCTCCTGGAGCCCCTGGCGCCCCCGGCCCTGTTGGTCCCACTGGAAAACAAGGAGACAGAGGCGAGACG
Seq A exon
GGTGCACAAGGGCCCATGGGTCCCTCTGGTCCCGCTGGAGCTCGAGGAATGCCG
Seq C2 exon
GGTCCCCAAGGACCTCGTGGTGACAAAGGTGAGACGGGAGAGGCTGGAGAGAGAGGGCTGAAGGGCCACCGTGGCTTCACCGGTCTGCAGGGTCTGCCCGGACCACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013587-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(16.9=27.8),PF0139113=Collagen=FE(46.7=100)
A:
PF0139113=Collagen=FE(22.7=100),PF0139113=Collagen=PU(13.1=44.4)
C2:
PF0139113=Collagen=PD(6.7=13.9),PF0139113=Collagen=FE(57.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGATCGTGGTGAGACCGG
R:
CTCACCTTTGTCACCACGAGG
Band lengths:
141-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]