GgaEX6047846 @ galGal3
Exon Skipping
Gene
ENSGALG00000013587 | COL2A1
Description
NA
Coordinates
chrUn_random:31475094-31475667:-
Coord C1 exon
chrUn_random:31475560-31475667
Coord A exon
chrUn_random:31475370-31475423
Coord C2 exon
chrUn_random:31475094-31475201
Length
54 bp
Sequences
Splice sites
3' ss Seq
CACCCCGGCTTCCTCCTCAGGGC
3' ss Score
10.18
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GGTCCCCAAGGACCTCGTGGTGACAAAGGTGAGACGGGAGAGGCTGGAGAGAGAGGGCTGAAGGGCCACCGTGGCTTCACCGGTCTGCAGGGTCTGCCCGGACCACCC
Seq A exon
GGCCCGTCTGGAGACCAAGGTGCTGCCGGTCCCGCTGGTCCCTCCGGTCCCAGA
Seq C2 exon
GGTCCCCCTGGTCCCGTCGGCCCCTCTGGCAAAGATGGCTCTAACGGCATGCCCGGCCCCATCGGTCCTCCCGGTCCCCGTGGACGGAGTGGTGAACCCGGCCCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013587-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(6.7=13.9),PF0139113=Collagen=FE(57.4=100)
A:
PF0139113=Collagen=PD(24.6=83.3),PF0139113=Collagen=PU(8.3=27.8)
C2:
PF0139113=Collagen=PD(19.3=30.6),PF0139113=Collagen=FE(58.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGTGGTGACAAAGGTGAG
R:
GCATGCCGTTAGAGCCATCTT
Band lengths:
148-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]