GgaEX6048223 @ galGal3
Exon Skipping
Gene
ENSGALG00000000160 | Q9PVW5_CHICK
Description
NA
Coordinates
chrUn_random:48419102-48422944:-
Coord C1 exon
chrUn_random:48422906-48422944
Coord A exon
chrUn_random:48420070-48420377
Coord C2 exon
chrUn_random:48419102-48419260
Length
308 bp
Sequences
Splice sites
3' ss Seq
AGAAGCCTCTCTTCTTTTAGGAA
3' ss Score
8.49
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GTACCCCGATTGGAACCCCGAGTCTCGCTCTTCAAAGCG
Seq A exon
GAATGCTGCAGACAGGAAGGAGAACCAGACCCCGAAGCACCGCTCCAACTCAGCCAGCCCCGGCCCCAGGCGCCCGAGGCCCGCAGGCTCCAGCTATGCCCCCCGGCACTCCCGCTCGCGCTCCCGGAGCCCGGGCCGCTACCGGCCGTCACGGCCCCGGAGCCGAAGCCCCCGGCAGGTGCGGCGCCTGAGCCCCAGGCACTGGTCACGGTCCCCACAAAGGTCCAGGAACCCCCTGAGGGGCAGCCCGCGGCCGCAGCGGTCCTCCAGCAATGAGTGGTCATCGAGGAGGGCCACCCGATCTCAAG
Seq C2 exon
ACAGGAAGGCAGCTCTGGAGGCGGTGATGAAGACGTTGGGACCCGGCTTTGTGGCAGAGTTCAACAAGCACAAATCATCCCAAACAGCCACAGCTGGGGCGTCGGGCTCGGGGAAGTCAGCACCCTCTCATGGAGCAGCAGGAAAAGCGCCTGGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000160-'7-6,'7-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.981
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCCCGATTGGAACCCCG
R:
CATTCCCAGGCGCTTTTCCT
Band lengths:
198-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]