RnoEX0101597 @ rn6
Exon Skipping
Gene
ENSRNOG00000014501 | Zfp638
Description
zinc finger protein 638 [Source:RGD Symbol;Acc:1309746]
Coordinates
chr4:115636561-115639943:+
Coord C1 exon
chr4:115636561-115636599
Coord A exon
chr4:115637966-115638273
Coord C2 exon
chr4:115639669-115639943
Length
308 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTTTCTACTCTGTAGAAA
3' ss Score
7.96
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
ATACCCTGATTGGAATCCTGAGATCCTCCCATCTAGAAG
Seq A exon
AAATGAGAGCAATAGGAAAGAAAATGAAACGCCAAGAAGACGTTCTCATTCCCCCAGTCCCAGACATTCTAGGAGATCAAGCTCAGGTCACAGAGTCCGTCGATCTCGAAGTCCCATTCGTTATATCTATAGACCAAGGAGTCGAAGTCCAAGAATTTGCCACCGTTTCATTTCTAAATATAGATCCAGATCTAGATCCAGATCCAGGTCCCGTTCTCCATATCGTAGTCGAAATCTCATTAGAAGAAGTCCGAAGTCCTATCGGTCAGTTAGTCCAGAAAGGACATCAAGAAGATCAGTGAGATCAG
Seq C2 exon
ATAGAAAAAAGGCATTAGAAGATGGAGGACAACGATCTATACATGGGACAGAAGTTACTAAACAGAAACATATTGAAGCAGTTGATAAAGGGCTCTCACCAGCACAAAAGCCTAAACTTACGAGTGGAACGAAACCATCCGCAAAATCTATAAGCTCTGTAAAGAGTGACTCACATTTAGGAGGACATTCTGCACACAAGTCTAAGAATCTTGAAGATGACACTTTACCTGAAGGTAAACAGGTGTCTGGTAAAGGTGCCTTGGTCCAGCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014501_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=0.776 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGATTGGAATCCTGAGATCC
R:
CTTTCGCTGGACCAAGGCAC
Band lengths:
311-619
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]