DreEX6004461 @ danRer10
Exon Skipping
Gene
ENSDARG00000104169 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr7:19383131-19384011:-
Coord C1 exon
chr7:19383973-19384011
Coord A exon
chr7:19383456-19383865
Coord C2 exon
chr7:19383131-19383348
Length
410 bp
Sequences
Splice sites
3' ss Seq
TACTTACCAATTATACACAGATC
3' ss Score
4.17
5' ss Seq
CACGTAAGA
5' ss Score
7.45
Exon sequences
Seq C1 exon
ATACCCTGACTGGAAGGTCGAGTCTGTCCCTGTTTCAAG
Seq A exon
ATCTGAGTCCAAATCTGAACACAGCAGCTCAAAGCGGCACGCTCGATCACACTCATACTCCAGATCCCCCAGCCCAAAAAGACACCATGAGTCTTCAAGTCGACGCAAAAGATCGCGTTCCCGCACCCGGTCTCGATCTAGATCTAGATCTAGATCCAGATCCCGCTCGCGATCCCGCTCCCGTGGCTCTAGAAGGTATCGGCGTAGCAGAAGTCGCACCCGGTCCCCCCATAGGAAGTCTCGATCCAGTCCCTACAGACGGAGGTCTCGTAGTCCACCATCTCAACGGGCCAGATCTCCAGGTTACAGTAGGAGGTCTCCACGTCGCTCCAGTCCACGCCGGAGCAGCCCTTCCAGGCAGCAGAGATCAAGCAGTAGTGAACTTCTAGCTATGAAACTCATGTCATCAC
Seq C2 exon
CTGAGCTTTCTTCAATCGCAGACAGTGATACTTTGAAAGCTATGGTGAAGTCCTTGGCACCAGCACTGCTGGCTGAACTAGCAAAGAAGAAAAGCAGTTCCACAGTTTCCTCATCAAAGGGAAGTAGCAGCAGCAGCAGGCGGTCTCCCCCTCCAAAGAAAACCGAATACTCTAGCACAAGCAGAACCTCCACTTCAAAGTCCCACAGCACTTCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104169-'5-9,'5-7,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=1.000 C2=0.959
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCTGACTGGAAGGTCGAG
R:
CTTCGAAGTGCTGTGGGACT
Band lengths:
256-666
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]