BtaEX6043231 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009242 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr11:13220111-13222564:-
Coord C1 exon
chr11:13222526-13222564
Coord A exon
chr11:13221490-13221782
Coord C2 exon
chr11:13220111-13220388
Length
293 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTTGCACTTTGTAGAAA
3' ss Score
8.22
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GTATCCTGATTGGAATCCTGAGATCCTCCCATCAAGAAG
Seq A exon
AAATGAAGGCAATAGAAAAGAAAATGAAACTCCAAGAAGACGATCTCATTCCCCCAGTCCGAGGCATTCTAGGAGATCAAGCTCAAGTCACAGATTTCGTCGATCTCGAAGCCCCGTACGTTGTATGTATAGACCAAGAAGCCGAAGTCCAAGAATTTGCCATCGTTTTATTCCTAGATACAGATCCAGATCCCGTTCACCGTATCGAATGAGAAATCCATTTAGAGGTAGTCCAAAATGCTTTCGATCAGTTAGCCCTGAAAGGACATCAAGGAGATCAGAGAGATCATCAG
Seq C2 exon
ATAGAAAAAAAGCATTAGAAGATGTAATACAACGATCTGGGCATGAGTCAGAATTCAGTAAACAGAAGCATCCTGAAGCAGTTGATAAAGGACACTCACCAGCACAAAAACTTAAAACTGGCAGTGGAGCAAAGACATCAGTTAAATCTACAAGTTCTGCAAAGAGTGATTCAAATATAGGAGGACATTGTACTCGTTACAAATCAAAGAATCTTGAAGATGATACCCCATCAGAAAGTAAACAAATGGCTGATAAAACTGTTTCTCTGCAACGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009242-'3-6,'3-5,4-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.643 A=0.939 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATCCTGAGATCCTCCCA
R:
TGCAGAGAAACAGTTTTATCAGCCA
Band lengths:
300-593
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]