HsaEX0074089 @ hg38
Exon Skipping
Gene
ENSG00000075292 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr2:71363153-71365706:+
Coord C1 exon
chr2:71363153-71363191
Coord A exon
chr2:71363954-71364252
Coord C2 exon
chr2:71365429-71365706
Length
299 bp
Sequences
Splice sites
3' ss Seq
TTCCGCCCCCCTGCTTGTAGAAA
3' ss Score
8.7
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GTATCCTGATTGGAATCCTGAGATCCTCCCATCGAGAAG
Seq A exon
AAATGAGGGCAATAGAAAAGAAAATGAAACTCCACGAAGACGTTCTCATTCCCCCAGTCCTAGGCGTTCTAGAAGATCAAGCTCAAGTCACAGATTCCGTCGGTCTCGAAGCCCAATGCATTACATGTATAGGCCGAGAAGTCGAAGTCCAAGAATTTGCCATCGTTTCATTTCTAGATACAGATCCAGATCCAGATCCCGTTCACCATATCGAATTAGAAATCCATTTAGAGGTAGTCCAAAATGCTTTCGATCAGTTAGCCCTGAGAGGATGTCAAGGAGATCAGTGAGATCATCAG
Seq C2 exon
ATAGAAAAAAAGCATTAGAAGATGTAGTACAACGATCTGGGCATGGGACAGAATTTAATAAACAGAAGCATCTTGAAGCTGCTGATAAGGGACATTCACCAGCACAAAAGCCTAAAACTAGCAGTGGAACAAAACCATCAGTTAAACCTACAAGCGCTACAAAGAGTGATTCAAATCTAGGAGGACATTCTATTCGTTGTAAATCAAAGAATCTTGAAGATGACACTTTGTCAGAATGTAAACAGGTGTCTGATAAAGCTGTTTCTCTCCAGCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075292_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.641 A=0.950 C2=0.769
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATCCTGAGATCCTCCCA
R:
AACAGCTTTATCAGACACCTGT
Band lengths:
292-591
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development