MmuEX6005214 @ mm10
Exon Skipping
Gene
ENSMUSG00000030016 | Zfp638
Description
zinc finger protein 638 [Source:MGI Symbol;Acc:MGI:1203484]
Coordinates
chr6:83941245-83944887:+
Coord C1 exon
chr6:83941245-83941283
Coord A exon
chr6:83942834-83943141
Coord C2 exon
chr6:83944613-83944887
Length
308 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTTTCTACTCTGTAGAAA
3' ss Score
7.96
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
ATACCCTGATTGGAATCCTGAGATCCTCCCATCCAGAAG
Seq A exon
AAATGAGAGCAATAGGAAAGAAAATGAAACTCCAAGAAGACGTTCTCATTCCCCCAGCCCCAGACATTCTAGGAGATCAAGCTCAGGTCACAGAATCCGTCGCTCTCGAAGTCCAGTCCGTTATATCTATAGACCAAGGAGTCGAAGTCCAAGAATTTGCCACCGTTTCATTTCTAAATATAGATCCAGATCCAGGTCCAGATCCAGGTCCCGTTCTCCATATCGTAGTCGGAATCTCCTTAGAAGAAGTCCGAAGTCCTATCGGTCAGCTAGCCCAGAGAGGACATCAAGAAAATCAGTGAGATCAG
Seq C2 exon
ATAGGAAAAAGGCATTAGAAGATGGAGGACAACGTTCTGTGCATGGGACAGAAGTTACTAAACAGAAACATACTGAAACAGTTGATAAAGGGCTCTCACCAGCACAAAAGCCAAAACTTGCCAGTGGAACAAAGCCATCAGCGAAATCTCTAAGCTCTGTAAAGAGTGATTCACATTTAGGAGCATATTCTGCTCACAAGTCTGAGAATCTGGAAGATGACACTTTACCAGAAGGTAAACAGGAGTCTGGTAAAAGTGCTTTGGCCCAGCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030016_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.643 A=0.942 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACCCTGATTGGAATCCTGAGA
R:
CGCTGGGCCAAAGCACTTTTA
Band lengths:
310-618
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types