GgaEX6048304 @ galGal3
Exon Skipping
Description
NA
Coordinates
chrUn_random:54063864-54064613:-
Coord C1 exon
chrUn_random:54064415-54064613
Coord A exon
chrUn_random:54064165-54064298
Coord C2 exon
chrUn_random:54063864-54064063
Length
134 bp
Sequences
Splice sites
3' ss Seq
TGCCCCCTGCTCGCTGACAGATG
3' ss Score
8.51
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
Exon sequences
Seq C1 exon
GTGCTGCCGCTGCCGCAGGTCTTCCGGAACCCCAGCTACAGCTCGCTGACCATCCGCAACGACATCACGCTGATCAAGCTGGCCACCCCAGCACAGCTGAACGCCCGCGTGGCGCCCGTCTGCCTGCCCCAGGCCACCGACGACTTCCCCGGGGGCCTGACCTGCGTCACCACGGGCTGGGGGCTCCTCAACTCCAACG
Seq A exon
ATGAGAACACGCCGGCCATCCTGCAGCAAGCGGCCCTTCCCCTGCTCACCAACGCGCAGTGCAAGCAGTACTGGGGCTTCCGCATCTACGACGTGATGGTGTGCGCCGGGGCCGACGGATCCTCCTCCTGCATG
Seq C2 exon
GGCGACTCCGGGGGCCCGCTGGTGTGCCAGAAGGACGGCGCCTGGACGCTGGTGGGCATCGTCTCGTGGGGCAGCAGCACCTGCTCCACCTCTACGCCTGGTGTGTACGCCCGTGTCACCAAGCTCCGCGAATGGATCGACTCCGTGCTGGCGGCCAACTGAGGCCCCAAATAAAGTTCCACTCCCACAACATGTCCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000038-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(42.0=98.5)
A:
PF0008921=Trypsin=FE(28.0=100)
C2:
PF0008921=Trypsin=PD(28.7=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACGACATCACGCTGATCA
R:
TACACACCAGGCGTAGAGGTG
Band lengths:
251-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]