MmuEX6038627 @ mm10
Exon Skipping
Gene
ENSMUSG00000031957 | Ctrb1
Description
chymotrypsinogen B1 [Source:MGI Symbol;Acc:MGI:88559]
Coordinates
chr8:111686519-111688725:-
Coord C1 exon
chr8:111688545-111688725
Coord A exon
chr8:111687101-111687234
Coord C2 exon
chr8:111686519-111686748
Length
134 bp
Sequences
Splice sites
3' ss Seq
CATTCCCTCTATCCCTGCAGCCC
3' ss Score
10.49
5' ss Seq
ATGGTACAG
5' ss Score
3.5
Exon sequences
Seq C1 exon
GTTTTTAAGAACCCCAAGTTCAACTCCTTCACCGTGCGTAATGACATCACCCTGCTGAAGCTGGCCACTCCTGCCCAGTTCTCTGAGACTGTGTCTGCCGTGTGTCTGCCCACTGTTGACGATGACTTCCCTGCTGGGACACTGTGTGCCACCACTGGCTGGGGCAAGACCAAATACAATG
Seq A exon
CCCTCAAGACCCCTGACAAGCTGCAGCAGGCTGCCCTGCCCATCGTGTCCGAGGCTAAGTGCAAGGAGTCCTGGGGTTCCAAGATCACCGATGTGATGATCTGCGCAGGCGCCAGTGGCGTCTCTTCCTGCATG
Seq C2 exon
GGTGACTCTGGTGGCCCCCTCGTCTGCCAGAAGGACGGAGTCTGGACCCTGGCAGGCATTGTGTCCTGGGGCAGTGGTTTCTGCTCCACTTCCACCCCTGCCGTGTATGCCCGAGTCACTGCCCTCATGCCCTGGGTTCAGGAGATCTTGGAAGCCAACTAAGTACACGGTCCTTTCCTCTTCCCTCTTCCTCCCCCTCCGTGCATCTACAATAAAAATCATCTAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031957-'7-9,'7-7,14-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(26.9=100)
A:
PF0008921=Trypsin=FE(19.7=100)
C2:
PF0008921=Trypsin=PD(20.2=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGTGCGTAATGACATCACC
R:
GGTGGAAGTGGAGCAGAAACC
Band lengths:
247-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types