DreEX6006180 @ danRer10
Exon Skipping
Gene
ENSDARG00000093844 | zgc:136461
Description
zgc:136461 [Source:ZFIN;Acc:ZDB-GENE-060519-7]
Coordinates
chr7:34797440-34798330:+
Coord C1 exon
chr7:34797440-34797620
Coord A exon
chr7:34797880-34798013
Coord C2 exon
chr7:34798103-34798330
Length
134 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTAACTTTTTTTTAGCTC
3' ss Score
7.88
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTTTTCAAGCATCCTAATTTCAACATGTTCACCATCAACAATGACATCCTGCTGATCAAGCTGGCCACTCCTGCTAAGATCAACACTCATGTGTCTCCTGTGTGTCTCGCCGAGACCAACGACAACTTCCCTGGTGGCATGAAGTGTGTGACCTCCGGATGGGGCCTGACCAAACACAATG
Seq A exon
CTCCTGATACCCCTGCCCTGCTCCAGCAGGCCGCTCTGCCTCTGCTGACCAATGAAGACTGCAAACGCTTCTGGGGAAACAAAATCACTGATCTAATGGTCTGTGCTGGAGCATCTGGTGCTTCTTCCTGCATG
Seq C2 exon
GGTGACTCTGGTGGTCCTCTGGTGTGTCAGAAAGATGGAGTCTGGACTCTGGTTGGTATCGTGTCCTGGGGTAGCAGCGTTTGCTCCACCAGTTCTCCCGGTGTTTACGCCCGCGTCACCAAGCTCCGTGCCTGGGTTGACCAGACCATCACTGCAAACTAAATCACCAAGCTAATGTTCATGGTCATAATGTTCATCAATAAAGCTTTATTTTGAAAAAAAAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093844-'4-8,'4-7,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(26.9=100)
A:
PF0008921=Trypsin=FE(19.7=100)
C2:
PF0008921=Trypsin=PD(20.2=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTGTCTCCTGTGTGTCTCG
R:
AGTGATGGTCTGGTCAACCCA
Band lengths:
247-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]