BtaEX6079282 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008500 | CTRB1
Description
Bos taurus chymotrypsinogen B1 (CTRB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001105330]
Coordinates
chr18:2590736-2592630:-
Coord C1 exon
chr18:2592450-2592630
Coord A exon
chr18:2591421-2591554
Coord C2 exon
chr18:2590736-2590950
Length
134 bp
Sequences
Splice sites
3' ss Seq
CACGCCCTCTGTCCTTCCAGCCC
3' ss Score
10.37
5' ss Seq
ATGGTACGG
5' ss Score
8.21
Exon sequences
Seq C1 exon
GTTTTCAAGAACCCCAAGTTCAGCATTCTCACAGTCCGCAATGACATCACCCTGCTGAAGCTGGCCACGCCCGCGCAGTTCTCAGAGACCGTGTCGGCCGTGTGCTTGCCCAGTGCCGACGAGGACTTCCCCGCTGGGATGCTGTGCGCCACCACGGGCTGGGGCAAGACCAAGTATAACG
Seq A exon
CCCTCAAGACCCCTGACAAGCTGCAGCAGGCCACCCTGCCCATCGTGTCCAACACCGACTGCAGGAAGTACTGGGGCAGCAGGGTCACCGATGTGATGATCTGTGCGGGGGCCAGCGGCGTCTCCTCCTGCATG
Seq C2 exon
GGCGACTCTGGCGGCCCCCTGGTCTGCCAGAAGAACGGAGCCTGGACCCTGGCGGGCATCGTGTCCTGGGGCAGCAGCACGTGCTCCACGTCCACGCCCGCCGTGTACGCCCGCGTCACTGCACTTATGCCGTGGGTGCAGGAGACCCTGGCTGCCAACTGAGCCTGGGCCTTCTGGCATCCCACCCCAAGAGTCCCTAATAAAATCCTCTGTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008500-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
80%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(26.9=100)
A:
PF0008921=Trypsin=FE(19.7=100)
C2:
PF0008921=Trypsin=PD(20.2=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTCTCAGAGACCGTGTC
R:
CTGCACCCACGGCATAAGTG
Band lengths:
248-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]