RnoEX0025265 @ rn6
Exon Skipping
Gene
ENSRNOG00000019068 | Ctrb1
Description
chymotrypsinogen B1 [Source:RGD Symbol;Acc:2444]
Coordinates
chr19:43906292-43908079:-
Coord C1 exon
chr19:43907899-43908079
Coord A exon
chr19:43906861-43906994
Coord C2 exon
chr19:43906292-43906505
Length
134 bp
Sequences
Splice sites
3' ss Seq
CATTCCCTGTATCCCTGCAGCCC
3' ss Score
9.41
5' ss Seq
ATGGTACAG
5' ss Score
3.5
Exon sequences
Seq C1 exon
GTCTTTAAGAACCCCAAGTTCAATATGTTCACTGTGCGCAATGACATCACTCTGCTGAAGCTGGCCACTCCTGCCCAGTTCTCTGAGACTGTGTCTGCCGTGTGTCTACCCAACGTCGATGATGACTTCCCTCCTGGCACTGTGTGCGCCACCACTGGCTGGGGCAAGACCAAATACAATG
Seq A exon
CCCTCAAGACCCCTGAGAAGCTGCAGCAGGCCGCCCTGCCCATCGTGTCCGAGGCTGACTGCAAGAAGTCCTGGGGTTCCAAGATCACCGATGTGATGATCTGCGCAGGCGCTAGCGGCGTCTCTTCCTGCATG
Seq C2 exon
GGTGACTCCGGTGGCCCCCTCGTCTGCCAGAAAGATGGAGTCTGGACCCTGGCAGGCATTGTGTCCTGGGGCAGTGGCGTCTGTTCCACTTCCACTCCTGCTGTGTATTCCCGAGTCACAGCCCTCATGCCCTGGGTTCAGCAGATCTTGGAAGCCAACTGAGTCCGTGGTTCTTGCCAACCCCCCTCTGAGCATCTACAATAAAAATCATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019068-'7-9,'7-7,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(26.9=100)
A:
PF0008921=Trypsin=FE(19.7=100)
C2:
PF0008921=Trypsin=PD(20.2=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGCGCAATGACATCACT
R:
GCAGGAGTGGAAGTGGAACAG
Band lengths:
252-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]