GgaEX7003056 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GMH5]
Coordinates
chr3:44668690-44671767:+
Coord C1 exon
chr3:44668690-44668764
Coord A exon
chr3:44669711-44669851
Coord C2 exon
chr3:44671661-44671767
Length
141 bp
Sequences
Splice sites
3' ss Seq
GCCACTGTCATTTCTTCCAGGTC
3' ss Score
11.08
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
TACCAACATGCATCATTGCGCTGGCACTCTGATACATCCACAATGGGTCCTTACTGCAGCTCAGTGCTTGCAAGA
Seq A exon
GTCAGTAGAGCCCTCTTCCTATAGGATTTTTCTTGGGATACAGAACCTAAATGCAGAAGAGCCATCCCTGCAAATCCGAAGTGTTCACAAATTACTGAAGGAACCCAGCGGAGCAGACATCGCTCTGCTAAAACTGAACAG
Seq C2 exon
TCCTATAAAAATTACTGACCACGTAAAACCAGTTTGTTTGCCTGAAACAAGTCTGATGATTGAAAGAAACTCCGTATGCTTTCTAACTGCCTTTGGAAAAACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028886-'15-16,'15-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.4=100)
A:
PF0008921=Trypsin=FE(21.4=100)
C2:
PF0008921=Trypsin=FE(16.4=100)
Main Skipping Isoform:
ENSGALT00000044267fB4525
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGGCACTCTGATACATCC
R:
CTTTTGTTTTTCCAAAGGCAGTT
Band lengths:
164-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]