RnoEX6000924 @ rn6
Exon Skipping
Gene
ENSRNOG00000017223 | Plg
Description
plasminogen [Source:RGD Symbol;Acc:619893]
Coordinates
chr1:48527785-48531346:-
Coord C1 exon
chr1:48531269-48531346
Coord A exon
chr1:48530530-48530670
Coord C2 exon
chr1:48527785-48527891
Length
141 bp
Sequences
Splice sites
3' ss Seq
AATGTCACCATCCTTTCTAGATC
3' ss Score
7.99
5' ss Seq
CCGGTACGG
5' ss Score
9.77
Exon sequences
Seq C1 exon
ATTTTCTGGACAGCACTTCTGTGGCGGTACTTTAATATCCCCAGAGTGGGTGCTGACTGCCGCTCACTGCTTGGAGAA
Seq A exon
ATCTTCGAGACCTGAATTCTACAAGGTTATCCTGGGAGCACACGAAGAACGAATCCTTGGGTCAGATGTTCAGCAAATAGCAGTAACCAAACTGGTCTTGGAACCCAACGACGCTGACATTGCCCTGCTGAAGCTAAGCCG
Seq C2 exon
CCCAGCCACCATCACAGATAATGTCATCCCAGCTTGTCTGCCATCTCCAAATTATGTGGTTGCCGACCGGACACTGTGTTACATCACCGGCTGGGGAGAAACGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017223-'24-24,'24-23,26-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.6=100)
A:
PF0008921=Trypsin=FE(21.0=100)
C2:
PF0008921=Trypsin=FE(16.1=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTTCTGTGGCGGTACTTT
R:
CTTTCGTTTCTCCCCAGCCG
Band lengths:
173-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]