HsaEX1028563 @ hg38
Exon Skipping
Gene
ENSG00000122194 | PLG
Description
plasminogen [Source:HGNC Symbol;Acc:HGNC:9071]
Coordinates
chr6:160738538-160741417:+
Coord C1 exon
chr6:160738538-160738612
Coord A exon
chr6:160739068-160739208
Coord C2 exon
chr6:160741311-160741417
Length
141 bp
Sequences
Splice sites
3' ss Seq
GACGTCCTCATCTTTTCTAGGTC
3' ss Score
11.1
5' ss Seq
CAGGTACTC
5' ss Score
7.04
Exon sequences
Seq C1 exon
GTTTGGAATGCACTTCTGTGGAGGCACCTTGATATCCCCAGAGTGGGTGTTGACTGCTGCCCACTGCTTGGAGAA
Seq A exon
GTCCCCAAGGCCTTCATCCTACAAGGTCATCCTGGGTGCACACCAAGAAGTGAATCTCGAACCGCATGTTCAGGAAATAGAAGTGTCTAGGCTGTTCTTGGAGCCCACACGAAAAGATATTGCCTTGCTAAAGCTAAGCAG
Seq C2 exon
TCCTGCCGTCATCACTGACAAAGTAATCCCAGCTTGTCTGCCATCCCCAAATTATGTGGTCGCTGACCGGACCGAATGTTTCATCACTGGCTGGGGAGAAACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122194-'28-40,'28-36,29-40
Average complexity
S
Mappability confidence:
100%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.2=100)
A:
PF0008921=Trypsin=FE(21.1=100)
C2:
PF0008921=Trypsin=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGGAATGCACTTCTGTGG
R:
GGTTTCTCCCCAGCCAGTGAT
Band lengths:
178-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains