DreEX0056348 @ danRer10
Exon Skipping
Gene
ENSDARG00000023111 | plg
Description
plasminogen [Source:ZFIN;Acc:ZDB-GENE-030131-1411]
Coordinates
chr20:42794709-42797752:-
Coord C1 exon
chr20:42797678-42797752
Coord A exon
chr20:42795655-42795795
Coord C2 exon
chr20:42794709-42794815
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTGTGCCATTTATTTTGCAGATC
3' ss Score
11.43
5' ss Seq
CAGGTTACA
5' ss Score
-1.25
Exon sequences
Seq C1 exon
AGGCAAAATTCATTTCTGTGGGGGAACATTAATTGATCCACAATGGGTCGTAACTGCAGCTCACTGCCTTGAGAG
Seq A exon
ATCTGATAGTCCATCTGCATACAAGATCATGCTAGGAATCCACACAGAGCGAGCAACTGAATCATCAAAACAGGAGCGAGATGTTACAAAGATTATTAAGGGACCAGCTGGAACTGACATTGCTCTTCTCAAGTTGGACAG
Seq C2 exon
GCCTGCATTAATAAATGATAAGGTGTCACCTGTATGTCTACCAGAAAAAGACTACATTGTACCCAGCAATACTGAATGCTATGTAACAGGATGGGGGGAGACACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023111-'17-19,'17-18,18-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.250 C2=0.027
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.2=100)
A:
PF0008921=Trypsin=FE(21.1=100)
C2:
PF0008921=Trypsin=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAAATTCATTTCTGTGGGGG
R:
CCCCCATCCTGTTACATAGCA
Band lengths:
171-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]