MmuEX6075141 @ mm10
Exon Skipping
Gene
ENSMUSG00000059481 | Plg
Description
plasminogen [Source:MGI Symbol;Acc:MGI:97620]
Coordinates
chr17:12410886-12414284:+
Coord C1 exon
chr17:12410886-12410963
Coord A exon
chr17:12411461-12411601
Coord C2 exon
chr17:12414178-12414284
Length
141 bp
Sequences
Splice sites
3' ss Seq
GATGTCACCATCCTTTCTAGATC
3' ss Score
7.83
5' ss Seq
CCGGTATGG
5' ss Score
8.44
Exon sequences
Seq C1 exon
ATTTACCGGACAGCACTTCTGTGGCGGTACTTTAATAGCCCCAGAGTGGGTTCTGACTGCTGCCCACTGTTTGGAGAA
Seq A exon
ATCTTCAAGACCTGAATTCTACAAGGTTATCCTGGGTGCGCACGAAGAATATATCCGTGGGTTGGATGTTCAGGAAATATCAGTAGCCAAACTGATCTTGGAGCCCAACAACCGTGACATTGCCCTGCTGAAACTAAGCCG
Seq C2 exon
CCCAGCCACCATCACGGATAAAGTCATTCCAGCTTGTCTGCCATCTCCAAATTACATGGTTGCTGACCGGACAATATGTTACATCACCGGCTGGGGAGAGACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059481-'19-33,'19-25,26-33=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.6=100)
A:
PF0008921=Trypsin=FE(21.0=100)
C2:
PF0008921=Trypsin=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTTCTGTGGCGGTACTTT
R:
CTTGAGTCTCTCCCCAGCCG
Band lengths:
173-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types