GgaEX6030395 @ galGal3
Exon Skipping
Gene
ENSGALG00000004293 | F1NWX6_CHICK
Description
NA
Coordinates
chr3:47281199-47283020:+
Coord C1 exon
chr3:47281199-47281273
Coord A exon
chr3:47281653-47281793
Coord C2 exon
chr3:47282914-47283020
Length
141 bp
Sequences
Splice sites
3' ss Seq
TGTGCAATTATTTCCAATAGGTC
3' ss Score
8.06
5' ss Seq
GAGGTATCC
5' ss Score
7.59
Exon sequences
Seq C1 exon
TTATGGCTTGCATTTCTGTGGGGGAACACTGATAGACCCAAAGTGGGTTCTTACTGCTGCTCACTGCTTAGAAAA
Seq A exon
GTCATTACGGCCATCTTCGTATAAAGTATACCTCGGATTACACGAAGAAAGAGCATTGGAATCATCAGTGCAGAAAAGAGATGTTGAGAAACTGTTCAAGGAGCCTCACGGGCAGGACATTGCTCTACTAAAACTGAGGAG
Seq C2 exon
CCCAGCAGTCATCACTGATCAGGTAATCCCTGTTTGCTTGCCAAAAGAAAATGCTGTGTTAGGAGGAAGAGAGGAGTGCTATGTAACAGGTTGGGGAGATACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004293-'17-17,'17-16,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.2=100)
A:
PF0008921=Trypsin=FE(21.1=100)
C2:
PF0008921=Trypsin=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCTTGCATTTCTGTGGGG
R:
CTTTTGTATCTCCCCAACCTGT
Band lengths:
180-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]