BtaEX6050375 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001271 | PLG
Description
Bos taurus plasminogen (PLG), mRNA. [Source:RefSeq mRNA;Acc:NM_173951]
Coordinates
chr9:98016582-98024241:-
Coord C1 exon
chr9:98024170-98024241
Coord A exon
chr9:98023479-98023619
Coord C2 exon
chr9:98016582-98016998
Length
141 bp
Sequences
Splice sites
3' ss Seq
AATGCGGATGTCTTCTCTAGCAT
3' ss Score
5.5
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
CTCGAGGCACTTCTGTGGAGGAACTCTGATATCCCCAAAGTGGGTGCTGACTGCTGCCCATTGCCTGGACAA
Seq A exon
CATTTTAGCGCTGTCATTCTACAAGGTCATCCTGGGTGCACACAACGAGAAAGTCCGGGAACAGAGTGTCCAGGAAATACCAGTGTCCAGGCTGTTCCGGGAGCCCTCTCAGGCGGACATTGCCTTACTCAAGCTGAGCAG
Seq C2 exon
GGTGACAGCGGCGGGCCTCTGGTCTGCTTTGAGAAGGACAAATACATTCTGCAAGGAGTCACTTCTTGGGGTCTTGGCTGTGCACGCCCCAATAAGCCTGGTGTGTATGTTCGTGTTTCCCCCTATGTTCCTTGGATTGAAGAAACTATGAGAAGGAATTAATTAGATGGGAGACAGTGACGCACCAACGGTTCTAGAAGCTGGAACATGGTAGGGAATCTAGCATGCTCAGAAATAATTGACAGTAATCCAACCAAGTAAGACACTCTCCTTAGCTGCCGTCTTCTGCCAAACCTCAACATTTTTTTGTGATGCTGTGAATAACATGTTCCTGACTGTGGACTGCTGGATTCTGTAATACCAAGGCAATACAGCTATGACATTTGTTGAAAATAAACTCGGTACTTCTTTTGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001271-'19-29,'19-24,20-29=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(10.8=100)
A:
PF0008921=Trypsin=FE(21.2=100)
C2:
PF0008921=Trypsin=PD(17.9=39.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCACTTCTGTGGAGGAACT
R:
TGCGTCACTGTCTCCCATCTA
Band lengths:
252-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]