HsaEX1022028 @ hg38
Exon Skipping
Gene
ENSG00000198670 | LPA
Description
lipoprotein(a) [Source:HGNC Symbol;Acc:HGNC:6667]
Coordinates
chr6:160537855-160541181:-
Coord C1 exon
chr6:160541107-160541181
Coord A exon
chr6:160540043-160540183
Coord C2 exon
chr6:160537855-160537961
Length
141 bp
Sequences
Splice sites
3' ss Seq
GACATCCTCATCTTTTCTAGGTC
3' ss Score
10.45
5' ss Seq
CAGGTACTC
5' ss Score
7.04
Exon sequences
Seq C1 exon
GTTTGGAAAGCACTTCTGTGGAGGCACCTTAATATCCCCAGAGTGGGTGCTGACTGCTGCTCACTGCTTGAAGAA
Seq A exon
GTCCTCAAGGCCTTCATCCTACAAGGTCATCCTGGGTGCACACCAAGAAGTGAACCTCGAATCTCATGTTCAGGAAATAGAAGTGTCTAGGCTGTTCTTGGAGCCCACACAAGCAGATATTGCCTTGCTAAAGCTAAGCAG
Seq C2 exon
GCCTGCCGTCATCACTGACAAAGTAATGCCAGCTTGTCTGCCATCCCCAGACTACATGGTCACCGCCAGGACTGAATGTTACATCACTGGCTGGGGAGAAACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198670-'46-46,'46-44,47-46
Average complexity
S
Mappability confidence:
100%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.7=100)
A:
PF0008921=Trypsin=FE(22.0=100)
C2:
PF0008921=Trypsin=FE(16.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGGAAAGCACTTCTGTGGA
R:
GGTTTCTCCCCAGCCAGTGAT
Band lengths:
178-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains