GgaEX7003315 @ galGal4
Exon Skipping
Gene
ENSGALG00000016341 | CSMD1
Description
CUB and Sushi multiple domains 1 [Source:HGNC Symbol;Acc:HGNC:14026]
Coordinates
chr3:89072626-89290989:+
Coord C1 exon
chr3:89072626-89072738
Coord A exon
chr3:89271485-89271679
Coord C2 exon
chr3:89290782-89290989
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTTTTCTTTAACAGTTT
3' ss Score
11.57
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
GTTATCTGGATTTCAGCTTCCATCATCTATTGTGAGCACAGGTTCCATCCTCACCCTCTGTTTCACCACAGACTTTGCTGTCAGTGCTCAAGGTTTCAAAGCTATCTATGAAG
Seq A exon
TTTTACCTAGTCATACATGTGGCAACCCAGGAGAAATACCTAAAGGAGTACTTCATGGAACAAGATTCAACATTGGAGATAAAATCCGATATAGCTGTATCTCTGGTTACATCTTAGAAGGCCATGCCATGTTGACATGTATTGTGAGTCCTGGAAATGGTGCATCGTGGGATTTTCCAGTTCCTTTTTGCAGAG
Seq C2 exon
CTGAAGGAGCATGTGGAGGGACACTACGTGGGACAAGTGGAACTATTTCAAGTCCTCACTTCCCTTCAGAGTACGAAAATAATGCTGACTGCACCTGGACCATATTGGCTGAACCAGGAGATACTATTGCTTTGATCTTTACTGACTTCCAGTTGGAAGAAGGATACGACTTCTTAGAGATCAGTGGAACAGAAGCACCTTCAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016341-'1-9,'1-4,3-9=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(34.0=92.3)
A:
PF0008415=Sushi=WD(100=87.9)
C2:
PF0043115=CUB=PU(63.7=92.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGTCTGGCATGTGAGGGAG
R:
TTACTATTTATGTGTGTACCTCTCGA
Band lengths:
186-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]