DreEX6059997 @ danRer10
Exon Skipping
Gene
ENSDARG00000044414 | csmd1a
Description
CUB and Sushi multiple domains 1a [Source:ZFIN;Acc:ZDB-GENE-050417-402]
Coordinates
chr13:6349925-6454265:+
Coord C1 exon
chr13:6349925-6350037
Coord A exon
chr13:6452025-6452219
Coord C2 exon
chr13:6453622-6454265
Length
195 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGTCTTCTGTTTCAGTTC
3' ss Score
11.51
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTGTCTGGCTTCATGTTGCCATCACCTATCGTAAGTTCGGGGTCCATTTTGGCACTGTGGTTTACTACAGATTTTGCAGTCAGTGCCCAAGGATTTAAAGCAATCTATGAAG
Seq A exon
TTCTGCCAAGTCACACATGTGGAAACCCAGGGTTGATACCCAGAGGAATTATCCATGGGACAAGGTACAACGTTGGTGACAAGATCCGCTACAGTTGTGTAATGGGATATGTTTTAGAGGGGCATGGAGTACTCACCTGCATAGTGAGCCCAGGAAGTGGAGCATCGTGGGATTTCCCAGTACCATTTTGTAGAG
Seq C2 exon
CCGAAGGATCATGTGGTGGGACATTACGAGGAACAACGGGAACTATATCAAGTCCACACTTTCCTTCGGAGTATGAGAACAATGCGGATTGCACATGGAGTATTCTGGCTGAGCCAGGGGACACTATTGCCCTAGTGTTTACAGACTTCCAACTTGAGGACAGATATGACTTTCTGGAGATCAGTGGCACAGAAGCACCATCAATATGGTAAGCAAAATCCCCTCTTTTGCTTTATTAAATTGTTATGTTTATACAATGTCAAGCAACAGCGACAGTTTATACATTAATTTTAGCAGTACGAATGACTTTTTGCACCTCAATACAATGTATGTTGGGTACAACTTGGAACGGTCAATGATTTGCTACTTCAAACAAAATCTCTGTTGTTACTGTGAACATCTGTGTAGAATCATCACAAAGTCTATTATTGCTGATGTAAACTTGCATATGATATTGCAATATGTTTTTACTTCCAAGGAAGTAAATCACAATCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044414-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(34.0=92.3)
A:
PF0008415=Sushi=WD(100=87.9)
C2:
PF0043115=CUB=WD(100=90.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTCGGGGTCCATTTTGGC
R:
TGTCCTCAAGTTGGAAGTCTGT
Band lengths:
242-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]