BtaEX0010211 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005784 | CSMD2
Description
CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:HGNC:19290]
Coordinates
chr3:112339432-112476930:+
Coord C1 exon
chr3:112339432-112339532
Coord A exon
chr3:112457564-112457758
Coord C2 exon
chr3:112476830-112476930
Length
195 bp
Sequences
Splice sites
3' ss Seq
ATCTCTCTTTCTGCTCACAGTGC
3' ss Score
9.69
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
TCAGCTGCCAGCCACCATCGTCAGTGCGGCCACCACCCTCTCTCTGCGCCTCATCAGTGACTACGCGGTCAGCGCACAGGGATTCCACGCCAGCTATGAGG
Seq A exon
TGCTCCCCAGCCACACGTGTGGGAACCCCGGGCGGCTGCCCAACGGTGTCCAGCAGGGCTCTACCTTCAACCTCGGTGACAAGGTCCGCTACAGCTGCAACCCCGGCTTCTTCCTGGAGGGCCACGCTGTGCTCACCTGCCACGCTGGCTCTGAGAACAGTGCCACGTGGGACTTCCCGCTGCCCTCCTGCCGAG
Seq C2 exon
CGGACGATGCATGCGGTGGGACCCTGCGGGGCCAGAGCGGCATCATCTCCAGCCCGCACTTCCCCTCGGAGTACCACAACAACGCCGACTGCACCTGGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005784-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGCCAGCCACCATC
R:
GTCGGCGTTGTTGTGGTACTC
Band lengths:
189-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development