MmuEX0012899 @ mm10
Exon Skipping
Gene
ENSMUSG00000028804 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:MGI Symbol;Acc:MGI:2386401]
Coordinates
chr4:128113651-128209924:+
Coord C1 exon
chr4:128113651-128113763
Coord A exon
chr4:128197202-128197396
Coord C2 exon
chr4:128209717-128209924
Length
195 bp
Sequences
Splice sites
3' ss Seq
ACATCCCCCTCTCTTCACAGTTC
3' ss Score
10.83
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCTCACCGGCTTTCAGCTACCAGCCACCATAGTCAGTGCGGCCAGCACCTTGTCCCTGAGCCTCATCAGCGACTATGCAGTCAGTGCCCAGGGCTTCCGTGCCAGCTATGAAG
Seq A exon
TTCTTCCGAGTCACACTTGTGGGAACCCAGGGAGGCTGCCCAATGGTATCCAGCAAGGCTCCACCTTCAACCTGGGCGACAAGGTCCGCTATAGCTGCAACCCCGGCTTCTTCCTGGAGGGCCACGCGGTGCTCACCTGCCATGCCAGCTCCGAGAACAGTGCCACGTGGGACTTCCCTTTGCCTTCCTGCAGAG
Seq C2 exon
CGGATGACGCCTGTGGAGGGACCCTGCGGGGCCAGAGTGGAATCATCTCCAGTCCCCACTTTCCTGCCGAGTATCACAACAATGCTGACTGCACATGGACCATCCTGGCTGAACTTGGAGACACCATCGCCCTGGTTTTTATTGACTTCCAGCTAGAGGATGGCTATGACTTCCTGGAGGTCACGGGGACCGAAGGCTCCTCTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028804-'4-7,'4-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(34.0=92.3)
A:
PF0008415=Sushi=WD(100=87.9)
C2:
PF0043115=CUB=PU(63.7=92.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCTCATCAGCGACTATGC
R:
CCGTGACCTCCAGGAAGTCAT
Band lengths:
242-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types