DreEX6073777 @ danRer10
Exon Skipping
Gene
ENSDARG00000001559 | csmd2
Description
CUB and Sushi multiple domains 2 [Source:ZFIN;Acc:ZDB-GENE-030616-39]
Coordinates
chr19:36915996-37001209:-
Coord C1 exon
chr19:37001097-37001209
Coord A exon
chr19:36929041-36929235
Coord C2 exon
chr19:36915996-36916203
Length
195 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTCACTTCATTTTAGCTC
3' ss Score
8.61
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTTGACGGGGTTTCAACTTCCAGCCCCTATAGTGAGCACAGGCCCCAGACTCACATTATGGTTGCTGTCAGACTATGCCGTAAGTGGCCAGGGATTCAAAGCCGTGTACGAAG
Seq A exon
CTCTTCCAAGCTACACATGTGGAAATCCAGGCCAGCTGCTCAACGGCATGCAGCAGGGATCCACCTTCAACATCGGGGACAAGATCCGCTACAGCTGCAACCAGGGATATGTTCTGGAGGGCCACACCGTGCTCTCCTGCCTGGCCACATCATCCGGCACCGCTGCCTGGGACTTCCCTCTGCCCTACTGCCGAG
Seq C2 exon
CGGATGATGGTTGTGGTGGCACTTTACGGGGTCAAAGCGGTGTTATTACCAGTCCAAATTACCCCCAGGAGTACAACAACAACGCAGACTGCACCTGGACCATCCTAGCCGAACCAGGAGACACCATCGCTCTGGTCTTCTCCGACTTTCAATTGGAAGAAGACTATGATGTACTGGAGATAACCGGCACAGAAGGATCATCTCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001559-'3-4,'3-2,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(34.0=92.3)
A:
PF0008415=Sushi=WD(100=87.9)
C2:
PF0043115=CUB=PU(63.7=92.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCTGTCAGACTATGCCGT
R:
TCTGTGCCGGTTATCTCCAGT
Band lengths:
246-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]