GgaEX0003260 @ galGal3
Exon Skipping
Gene
ENSGALG00000002602 | CSMD2
Description
NA
Coordinates
chr23:4972396-5002076:+
Coord C1 exon
chr23:4972396-4972508
Coord A exon
chr23:4994887-4995081
Coord C2 exon
chr23:5001869-5002076
Length
195 bp
Sequences
Splice sites
3' ss Seq
GAATCACCTTCCTTTGGCAGTTC
3' ss Score
6.17
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
GTTAACGGGTTTCCAGCTGCCTGCTCCTATTGTGAGTACGGGGGTCGTGCTGTCCTTGTGGCTTGTGAGTGACTACGCAGTCAGTGCTCAAGGCTTCCAGGCAAACTATGAAG
Seq A exon
TTCTACCCAGTCACACGTGTGGGAACCCAGGCAGGCTGCAGAACGGTGTTCAGCAGGGAACGACGTTCAGCATCGGGGACAAAGTGAGGTACAGCTGCAACCCCGGCTTCTTCCTGGAGGGCCACGCGCTGCTCACGTGCCAGGCCAGCATGGAGAACGGAGCCTCCTGGGATTTTCCTCTCCCCTTCTGCAGAG
Seq C2 exon
CTGATGATGCTTGCGGAGGGACGCTGAGGGGGCAGAGCGGGATTATCTCCAGCCCACACTTTCCTTTGGAGTATGGCAATAATGCAGACTGCACGTGGACTATTCTCGCTGAGCCCGGAGACACGATTGCCCTGGTGTTCATGGATTTTCAGCTGGAAGATGGATACGACGTTTTAGAGGTTGCTGGAACGGAGGGATCTTCGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002602-'2-5,'2-4,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(34.0=92.3)
A:
PF0008415=Sushi=WD(100=87.9)
C2:
PF0043115=CUB=PU(63.7=92.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCTGCTCCTATTGTGAG
R:
TCCATGAACACCAGGGCAATC
Band lengths:
243-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]