MmuEX0012899 @ mm9
Exon Skipping
Gene
ENSMUSG00000028804 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:MGI Symbol;Acc:MGI:2386401]
Coordinates
chr4:127790895-127887168:+
Coord C1 exon
chr4:127790895-127791007
Coord A exon
chr4:127874446-127874640
Coord C2 exon
chr4:127886961-127887168
Length
195 bp
Sequences
Splice sites
3' ss Seq
ACATCCCCCTCTCTTCACAGTTC
3' ss Score
10.83
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCTCACCGGCTTTCAGCTACCAGCCACCATAGTCAGTGCGGCCAGCACCTTGTCCCTGAGCCTCATCAGCGACTATGCAGTCAGTGCCCAGGGCTTCCGTGCCAGCTATGAAG
Seq A exon
TTCTTCCGAGTCACACTTGTGGGAACCCAGGGAGGCTGCCCAATGGTATCCAGCAAGGCTCCACCTTCAACCTGGGCGACAAGGTCCGCTATAGCTGCAACCCCGGCTTCTTCCTGGAGGGCCACGCGGTGCTCACCTGCCATGCCAGCTCCGAGAACAGTGCCACGTGGGACTTCCCTTTGCCTTCCTGCAGAG
Seq C2 exon
CGGATGACGCCTGTGGAGGGACCCTGCGGGGCCAGAGTGGAATCATCTCCAGTCCCCACTTTCCTGCCGAGTATCACAACAATGCTGACTGCACATGGACCATCCTGGCTGAACTTGGAGACACCATCGCCCTGGTTTTTATTGACTTCCAGCTAGAGGATGGCTATGACTTCCTGGAGGTCACGGGGACCGAAGGCTCCTCTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028804-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCTCATCAGCGACTATGC
R:
CCGTGACCTCCAGGAAGTCAT
Band lengths:
242-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: