MmuEX6034659 @ mm10
Exon Skipping
Gene
ENSMUSG00000060924 | Csmd1
Description
CUB and Sushi multiple domains 1 [Source:MGI Symbol;Acc:MGI:2137383]
Coordinates
chr8:16697916-17027337:-
Coord C1 exon
chr8:17027225-17027337
Coord A exon
chr8:16710508-16710702
Coord C2 exon
chr8:16697916-16698123
Length
195 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTCTCCCTCCAACAGTTT
3' ss Score
10.76
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCTGTCAGGATTCCAGCTGCCTTCCTCCATCGTGAGCACCGGGTCGCTCCTCACGCTCTGGTTCACCACGGACTTTGCAGTGAGCGCACAGGGTTTCAAGGCCATGTACGAAG
Seq A exon
TTTTACCTAGTCACACGTGTGGAAACCCTGGGGAGATACTGAAAGGAGTTCTCCACGGAACGAGGTTCAACATAGGCGACAAGATCAGGTACAGCTGTCTCTCCGGCTACATCTTGGAAGGTCACGCCATTCTGACTTGCATTGTCAGCCCTGGGAATGGTGCATCCTGGGACTTCCCAGCTCCTTTCTGCAGAG
Seq C2 exon
CTGAGGGAGCCTGCGGGGGAACCCTAAGGGGAACCAGCGGTTCCATATCCAGCCCTCACTTCCCCTCTGAGTATGACAATAATGCCGACTGCACGTGGACCATCTTGGCTGAGCCTGGGGACACCATTGCTCTTGTTTTTACTGACTTCCAGCTGGAGGAAGGATACGACTTCTTAGAGATCAGCGGGACAGAAGCACCATCCATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060924-'10-21,'10-20,13-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(34.0=92.3)
A:
PF0008415=Sushi=WD(100=87.9)
C2:
PF0043115=CUB=PU(63.7=92.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGGATTCCAGCTGCCTTC
R:
AACAAGAGCAATGGTGTCCCC
Band lengths:
247-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types